Hello,
I am trying to use bbregister to take an .annot file of a particular structure and register it to MNI space. I want to be able to use one of the FreeSurfer parcellations of the ACC (lh.caudalanteriorcingulate.label) and do a fMRI BOLD extraction in FSL in MNI space. Below is the command I used and the error message I am getting. Please let me know if what I am doing makes any sense or if I am way off base.
Input
bbregister --s fsaverage --mov /u/home/n/nhutche/temp/labels/lh.caudalanteriorcingulate.label --t1 --init-fsl --reg register.dat
Output
mkdir: cannot create directory `./tmp.bbregister.6489': Permission denied
Log file is register.dat.log
register.dat.log: Permission denied.
Take care, Dr. Nathan Hutcheson Postdoctoral Researcher University of California Los Angeles Semel Institute 760 Westwood Plaza C8-202 Los Angeles, CA 90024 T: 770.841.1694 nathanhutcheson.com http://www.linkedin.com/pub/nathan-hutcheson/3a/7a8/a46