Hello,
I am currently having an issue getting my recon's to recognize multiple sets of control points. When I create a control point set, I make sure I select "control points", place them on the brainmask, and save them in the "tmp" folder as control.dat, control2.dat, control3.dat, etc.
I have been using the command recon-all -autorecon2 -autorecon3 -s Subject1
There does not seem to be a problem when I just have one set of control points. However, when I have multiple sets, I can see where control points have not been taken into account and have not altered the intensity of the voxels at all. I currently have them re-running with the command recon-all -autorecon2-cp -autorecon3 -s Subject1 to see if that makes a difference.
However, as I said before, one set of control points was previousy effective simply using the command recon-all -autorecon2 -autorecon3 -s Subject1
Any ideas?
Thanks, Francesco
Francesco Siciliano, B.A. Research Assistant Department of Child and Adolescent Psychiatry The New York State Psychiatric Institute Columbia University 1051 Riverside Drive, Unit 74 New York, NY 10032 (212) 543-6155