Once again Thank You Dr. Greve.
I'm sorry I did not see that before.
The command : aparcstats2table --skip --delimiter comma --hemi lh --parc=BA --meas volume --tablefile V5vo-BA-lh.csv --subjectsfile=a.txt
works great.
B.A.
On Thu, May 3, 2012 at 11:28 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
It's aparcstats2table, not asegstats2table
On 05/03/2012 02:19 PM, Brain Apprentice wrote:
Thank you very much Dr. Greve.
I must still be doing something wrong.
When I try : asegstats2table --skip --common-segs --delimiter comma --tablefile V5vo-BA-lh.csv --hemi lh --parc=BA --meas volume --subjectsfile=a.txt I get : asegstats2table: error: no such option: --hemi
When I try : asegstats2table --skip --common-segs --delimiter comma --tablefile V5vo-BA-lh.csv --parc=BA --meas volume --subjectsfile=a.txt I get : asegstats2table: error: no such option: --parc
When I try : asegstats2table --skip --common-segs --stats=lh.BA.stats --meas volume --delimiter comma --tablefile V5vo-BA-lh.csv --subjectsfile=a.txt I do not get an error message, however, the table that is creates only has a single column "Measure:volume" with subjects listed in that column.
Do you have a newer version of the "asegstats2table" than what comes with "freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0".
Once again thank you very much for your suggestions.
B.A.
On Thu, May 3, 2012 at 10:04 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
you need to run aparcstats2table, something like
aparcstats2table --skip --tablefile V5vo-BA-lh.dat --parc=BA --meas volume --hemi lh --delimiter comma ...
On 05/02/2012 03:10 PM, Brain Apprentice wrote:
Hello Surfers,
Command: asegstats2table --skip --delimiter comma --common-segs --stats=lh.BA.stats --meas volume --tablefile V5vo-BA-lh.csv --subjectsfile=a.txt
I am trying to create a table of "lh.BA.stats" values where all subject are listed in a.txt.
asegstats2table tries to work however there is nothing in the table but the subject-id's. Does anyone have any ideas what is going wrong?
Thanks,
B.A. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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