27 Sep
2005
27 Sep
'05
3:22 p.m.
Hi, I'm using version "freesurfer-Linux-centos4.0_x86_64-dev20050921-full". After recon-all ... -autorecon1, the skull is stripped but a decent portion of the meninges remain. I tried using recon-all -skullstrip -wsthresh <h> -subjid <ID> I ran that with h=20, h=10 and h=2. It didn't seem to help so I ran recon-all ... -autorecon2 In the aseg, the meninges are labelled as cerebral cortex. There are also places where non-cerebellar areas were labelled as cerebellum cortex. Is there an automated way to fix either of these or should I fix it with manual edits? Michele