Dear Walker,
We currently don’t have a longitudinal pipeline for the hypothalamic subunits. We are currently working on a longitudinal version for our deep learning segmentation tools, but we don’t have anything available yet.
You can always run the module on the timepoints independently for now.
Kind regards,
Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
On Sep 29, 2021, at 13:22, Pedersen, Walker Scott <WPEDERSEN@mgh.harvard.edumailto:WPEDERSEN@mgh.harvard.edu> wrote:
I see that generating the hippocampal subfields in the longitudinal pipeline has its own script (segmentHA_T1_long.sh), but am not seeing a corresponding script or command to do the same for the hypothalamic subunits. Would simply running mri_segment_hypothalamic_subunits on my subject_session.long.template folders get me there, or would that be violating the logic of the logitudinal pipeline, by not taking advantage of the unbiased template? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer