Try running this to see if there is a difference mri_diff --po ThalamicNuclei.v10.T1.mgz Left-Ventroposterior.mgz Sometimes it is not easy to see a difference that is just a few voxels
On 5/11/2020 3:02 AM, stdp82@virgilio.it wrote:
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By visualizing the output by freeview, I found that it was the same of ThalamicNuclei.v10.T1.mgz.
Thanks
Il 11 maggio 2020 alle 2.19 Bruce Fischl < fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> ha scritto:
Hi Stefano
can you elaborate? Why do you suspect there is an error?
cheers Bruce On Mon, 11 May 2020, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote:
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Please, could you check the command line. I suspect that an error is there. Thanks. Stefano
mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130 8133 --o Left-Ventroposterior.mgz
Il 30 aprile 2020 alle 18.51 "Douglas N. Greve" < dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> ha scritto: You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only segid segidreplace ... --o newseg.mgz to create a new segmentation with merged segments, then using vol2subfield with the newseg seg as --sf On 4/29/2020 7:57 PM, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote: External Email - Use Caution Hi list, vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz extracts the time course from each thalamic subregions. If I would like to merge multiple regions (e.g. --id 8115 --id 8116) and extract a single time course from them, which is the way? Thanks
Stefano
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