Hi Thomas, I have a feeling this issue has been fixed in recent updates, but I’ll need some more info to troubleshoot. Can you send the buildstamp (using the bugr command) for this FS dev version as well as the platform and version of the system you're running it on?
thanks Andrew
On March 11, 2018 at 7:45:06 AM, Frodl, Thomas (thomas.frodl@med.ovgu.demailto:thomas.frodl@med.ovgu.de) wrote:
Dear All,
could you pease give me some advice? When I tried to run the new hippocampal subfield analysis on our high Performance System I got the following error (copied below). It seems the it can't find this MEX file.
Many thanks and best wishes
Thomas
#--------------------------------------------
#@# Hippocampal Subfields processing (T1) left Sat Mar 10 16:54:52 GMT 2018
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Setting up environment variables
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LD_LIBRARY_PATH is .:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//runtime/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//bin/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//sys/os/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/lib/vtk/lib/vtk-5.6:/home/support/apps/cports/rhel-6.x86_64/gnu/glib/2.46.2/lib:/home/support/apps/libs/qwt/6.1.3/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/vtk/5.10.1/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/Python/2.7.12/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/tcl/8.5.19/lib:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//sys/opengl/lib/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/lib/vtk/lib/vtk-5.6:/home/support/apps/cports/rhel-6.x86_64/gnu/glib/2.46.2/lib:/home/support/apps/libs/qwt/6.1.3/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/vtk/5.10.1/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/Python/2.7.12/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/tcl/8.5.19/lib
Invalid MEX-file '/tmp/MCR_500598999/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2/bin/kvlGEMSMatlab.mexa64': /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /tmp/MCR_500598999/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2/bin/kvlGEMSMatlab.mexa64)
Error in kvlClear (line 11)
Error in segmentSubjectT1_autoEstimateAlveusML (line 115)
MATLAB:invalidMEXFile
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