Got it : aseg2feat --feat featdir --seg aparc+aseg
On 06/22/11, "Sudhin A. Shah" sut2006@med.cornell.edu wrote:
Hi,
So I think I found the solution - (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RegisterFeatOntoAnatomic...)
reg-feat2anat aseg2feat or aparc2feat
New question: Is there anyway to combine aseg2feat and aparc2feat? i.e. get all subcortical and cortical segmentations registered to functional space?
Thanks, S
On 06/21/11, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Hi Sudhin, this looks like an AFNI question. Have you tried posting to the AFNI list? doug
Sudhin A. Shah wrote:
On Jun 17, 2011, at 6:25 PM, "Sudhin A. Shah" <sut2006@med.cornell.edu <mailto:sut2006@med.cornell.edu sut2006@med.cornell.edu>> wrote:
Hi,
Can somebody please help me figure out how to correct this issue?
1 subject - 2 functional scans
run recon-all on subject anatomical.
process functional series (using AFNI/FSL) - each individually.
use
(http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html) (http://afni.nimh.nih.gov/pub/dist/doc/program_help/@ROI_Corr_Mat.html%29) @ROI_Corr_Mat -ts proc_func1 -roi aparc+aseg -prefix all (each individually)
This works (I don't know why since I am not doing anything to register them to a common space).
- I get a square matrix of 109 (n x n correlation matrix) in 1
timepoint and 112 in 2nd timepoint.
I would like to get the /exact same number /so I can compare them! Of course I can manually adjust the rows/columns later, but I am not sure this is the smartest way to do this.
Can I do all the steps in Freesurfer?
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