Hi Ping
first, all files in the mri dir are in native coordinates (or "conformed" versions of them), not transformed to any other coordinate system. The norm has been linearly registered to our internal atlas and is subsequently nonlinearly registered to it, but remains in its original coordinate system. The transforms are in the mri/transforms dir (e.g. the nonlinear one is called talairach.m3z) and can be applied using mri_convert -at.
cheers Bruce
On Tue, 16 Jul 2019, ping cao wrote:
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Dear expert, I want to know if the norm.mgz is already linearly registered？ And is the T1.mgz not linearly registered? They are all generated from recon-all. Is there any file non-linearly registered?
Best wishes,ping