Hi Lilla, unfortunately, there is no correspondence between the Freesurfer labels and the labels in the MNC volume at this point. I would simply like to convert each label in the MNC file to a new Freesurfer label file. Caspar
2014/1/6 Lilla Zollei lzollei@nmr.mgh.harvard.edu
Hi Caspar,
One thing you can do, if you have the label correspondences between your lables and the FS ones, is to use mri_binarize with the --replace option in your volumes.
--replace V1 V2 : replace voxels=V1 with V2
For label descriptions you can loook up $FREESURFER_HOME/ FreeSurferColorLUT.txt.
--Lilla
On Mon, 6 Jan 2014, Caspar M. Schwiedrzik wrote:
Hi!
I have a volume in MNC format that contains labels, and I was wondering whether there is a way to quickly convert them into Freesurfer labels? Within the MNC file, voxels belonging to one label all have the same intensity value, which is, however, not in RGB space but just a single number, ranging from 1 to the number of labels. Thanks, Caspar
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