3 Dec
2015
3 Dec
'15
8:43 a.m.
Hi James
what kind of segmentation? If gray/white you could replace the wm.mgz and go from there, otherwise you would replace the aseg.mgz. In either case, make sure you use our conventions (the FreeSurferColorLUT.txt for the aseg, or set every wm voxel to the brain.mgz intensity if it is in the white matter, and zero otherwise)
cheers Bruce On Thu, 3 Dec 2015, james pardon wrote:
Dear All, I was wondering whether there is a simple way to pass T1 segmentations I have from another software to Freesurfer, in order to do the remaining recon-all steps?
Thank you in advance, James