We do not have a way to resolve the overlapping problem. That is something you will have to figure out. You should be able to keep the colors the same by specifying the entries in the color table doug
On 6/19/14 3:41 PM, Karen Marie Sandø Ambrosen wrote:
Dear Freesurfer experts,
I have made a parcellation of the white matter surface outside of freesurfer in volumes. I convert the volume labels to surface labels. I have now a lot of surface labels (~500 for each hemisphere) which I want to concatenate to an annotation file for easier visualization. When I use mris_label2annot to perform this operation I get a lot of warnings: "WARNING: vertex 6021 maps to multiple labels! (overwriting)", and the result does not look right. When I load some of the single labels into freeview or tksurfer they look fine. Does anyone know how to perform this operation? How do I avoid the warnings?
I do the operations (volume labels-->surface labels-->annotation) on each hemisphere separately, but I have some regions located in both hemispheres. Is it then possible to keep the whole region the same color across hemispheres during the operations?
Best, Karen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer