Dear Doug,
Thank you, this is very helpful! I had searched the web and the fs site extensively but did not find anything helpful on this problem before you rescued me.
I have some follow up questions:
1. Can the DeMeanFlag be used in qdec (qdec was segfaulting when doing similar analyses and presumably it is for the same reason)
2. When does correlations between covariates becomes a problem (e.g. 0.6 or 0.9)
3. When using dods, what are my options with somewhat correlated measures. I research brain changes in ageing. Typically I control for age, gender, icv, and sometimes other variables. In ageing, age, icv, and cognition tend to be correlated but it is critical to control, say, for icv to determine whether an effect of interest is due to women having on average smaller heads and therefore smaller brains or due to brain atrophy in some individuals, or to other factors.
I really appreciate yours and your team's efforts both in developing great software and answering questions from challenged users like myself.
Regards,
Nic
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Wed 3/12/2008 5:34 AM To: Nicolas Cherbuin Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_glmfit problem
The problem is that there is a strong correlation in the two continuous variables due to their large non-zero means. The knee-jerk reaction is to simply demean the variables which is sometimes the right thing to do and sometimes not. In this case, I think it is ok because you are using DOSS. If you were to switch to DODS, it would be the wrong thing to do. Note, you can instruct mri_glmfit to demean the continuous variables by adding the following line to your fsgd file:
DeMeanFlag 1
Again, you should be careful with this and don't use it with DODS
doug
Nicolas Cherbuin wrote:
Hi,
I am analysing structural data with mri_glmfit. After pre-processing I have first used one group variable (gender) with one covariate age. I had no problem processing the data and visualising it in tksurfer.
I then tried to add another covariate (measure of immediate recall). So I had in total one group variable and two covariates. I reanalysed the data but got the following error:
FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /media/storage2/proc/freesurfer/60_w2/checked/analysis/lh.gender_age_immrec.thickness.10.mgh logyflag 0 usedti 0 FSGD gender_age_immrec_fsgd.txt glmdir lh.gender_age_immrec.glmdir DoFFx 0 Creating output directory lh.gender_age_immrec.glmdir Loading y from /media/storage2/proc/freesurfer/60_w2/checked/analysis/lh.gender_age_immrec.thickness.10.mgh Matrix condition is 12866.7 ERROR: matrix is ill-conditioned or badly scaled, condno = 12866.7 Possible problem with experimental design: Check for duplicate entries and/or lack of range of continuous variables within a class. 0.000 1.000 68.000 10.000; 1.000 0.000 65.000 5.000; [trunkated the fsgd file output but it is the same as the one used for the sucessful analysis except for one extra column]
After this error I thoroughly checked all my files but could not find anything wrong. So to check I could do an analysis using the extra variable I did another analysis with gender and immrec. This worked without problem.
I have attached all my fsgd files and mat files. They all use the same subjects and gender info and only differ by one column. Since permutations worked I cannot fathom why it does not work when all put together.
The mri_glmfit syntax used for each analysis was:
mri_glmfit --y lh.gender_age_immrec.thickness.10.mgh --fsgd gender_age_immrec_fsgd.txt doss --glmdir lh.gender_age_immrec.glmdir --surf average100 lh --C gender_age_immrec.mat
mri_glmfit --y lh.gender_immrec.thickness.10.mgh --fsgd gender_immrec_fsgd.txt doss --glmdir lh.gender_immrec.glmdir --surf average100 lh --C gender_immrec.mat
mri_glmfit --y lh.gender_age_immrec.thickness.10.mgh --fsgd gender_age_immrec_fsgd.txt doss --glmdir lh.gender_age_immrec.glmdir --surf average100 lh --C gender_age_immrec.mat
I use 4.01 (but also checked with 4.02) under Ubuntu 64 bit on a Xeon machine.
Thanks very much for your help
Nic
GroupDescriptorFile 1 Class Male plus blue Class Female circle red Variables age Input 60047 Female 68 Input 60092 Male 65 Input 60094 Female 69 Input 60129 Female 69 Input 60145 Male 68 Input 60155 Female 69 Input 60160 Male 66 Input 60241 Male 68 Input 60286 Female 65 Input 60326 Male 65 Input 60330 Male 69 Input 60345 Female 67 Input 60398 Male 65 Input 60408 Female 65 Input 60440 Male 65 Input 60442 Male 68 Input 60448 Male 66 Input 60452 Female 64 Input 60460 Female 69 Input 60463 Female 69 Input 60472 Female 65 Input 60482 Female 65 Input 60484 Female 67 Input 60491 Female 68 Input 60525 Female 65 Input 60538 Male 67 Input 60540 Female 68 Input 60541 Male 64 Input 60549 Male 69 Input 60553 Female 68 Input 60560 Male 67 Input 60629 Female 65 Input 60631 Female 66 Input 60644 Male 65 Input 60658 Male 66 Input 60664 Male 67 Input 60665 Female 64 Input 60667 Male 64 Input 60682 Female 67 Input 60689 Male 67 Input 60695 Male 67 Input 60697 Male 69 Input 60708 Female 67 Input 60719 Male 64 Input 60726 Male 67 Input 60728 Male 65 Input 60742 Female 69 Input 60751 Female 66 Input 60763 Female 69 Input 60766 Female 65 Input 60776 Female 69 Input 60782 Male 66 Input 60786 Male 67 Input 60788 Male 66 Input 60791 Female 67 Input 60813 Female 67 Input 60834 Male 66 Input 60838 Female 65 Input 60866 Male 66 Input 60876 Male 64 Input 60877 Female 68 Input 60887 Male 68 Input 60891 Female 66 Input 60893 Male 68 Input 60910 Male 68 Input 60913 Female 68 Input 60914 Female 67 Input 60915 Female 68 Input 60917 Female 68 Input 60936 Female 66 Input 60943 Female 65 Input 60966 Female 65 Input 60968 Male 67 Input 60977 Female 67 Input 61021 Female 67 Input 61057 Male 69 Input 61068 Female 67 Input 61083 Female 67 Input 61107 Male 64 Input 61121 Male 66 Input 61124 Male 68 Input 61160 Male 67 Input 61166 Male 68 Input 61187 Male 64 Input 61196 Female 66 Input 61198 Female 69 Input 61200 Female 67 Input 61204 Female 69 Input 61218 Female 65 Input 61225 Female 66 Input 61240 Female 66 Input 61242 Male 67 Input 61247 Male 67 Input 61259 Male 68 Input 61262 Male 65 Input 61270 Male 67 Input 61288 Female 69 Input 61290 Female 67 Input 61303 Male 66 Input 61320 Female 66 Input 61347 Male 68 Input 61358 Female 66 Input 61361 Male 66 Input 61384 Male 66 Input 61392 Female 65 Input 61400 Male 65 Input 61449 Female 69 Input 61478 Male 65 Input 61512 Female 67 Input 61523 Male 67 Input 61525 Male 66 Input 61527 Male 66 Input 61558 Male 67 Input 61564 Female 67 Input 61572 Male 69 Input 61573 Male 66 Input 61577 Female 67 Input 61581 Female 66 Input 61590 Male 68 Input 61611 Female 66 Input 61624 Female 66 Input 61627 Male 69 Input 61635 Male 68 Input 61639 Female 65 Input 61645 Male 66 Input 61650 Male 66 Input 61705 Female 65 Input 61706 Female 65 Input 61730 Male 65 Input 61742 Female 65 Input 61778 Female 65 Input 61782 Male 66 Input 61785 Female 65 Input 61793 Female 66 Input 61795 Female 68 Input 61801 Male 66 Input 61806 Female 66 Input 61830 Female 68 Input 61840 Male 66 Input 61858 Male 66 Input 61878 Male 67 Input 61884 Female 65 Input 61887 Female 66 Input 61895 Male 67 Input 61922 Male 64 Input 61927 Male 67 Input 61937 Female 65 Input 61940 Male 67 Input 61953 Male 65 Input 61958 Female 69 Input 61964 Male 69 Input 61966 Male 66 Input 61978 Male 67 Input 61998 Male 65 Input 62027 Male 68 Input 62044 Male 65 Input 62082 Female 66 Input 62104 Male 65 Input 62113 Female 68 Input 62162 Male 66 Input 62163 Male 65 Input 62181 Female 65 Input 62186 Female 65 Input 62188 Male 67 Input 62194 Male 66 Input 62195 Female 65 Input 62208 Female 66 Input 62242 Female 67 Input 62246 Female 65 Input 62251 Female 68 Input 62256 Male 65 Input 62267 Male 65 Input 62306 Female 67 Input 62346 Male 69 Input 62355 Male 68 Input 62390 Male 67 Input 62395 Female 65 Input 62416 Male 67 Input 62443 Male 68 Input 62465 Male 65 Input 62474 Male 64 Input 62480 Male 69 Input 62484 Male 65 Input 62496 Female 64 Input 62500 Male 66 Input 62516 Male 66 Input 62523 Female 66 Input 62529 Female 64 Input 62538 Male 69 Input 62571 Male 65 Input 62581 Female 67 Input 62585 Male 69 Input 62630 Male 67 Input 62640 Male 66 Input 62649 Female 66 Input 62671 Male 65 Input 62675 Male 67 Input 62685 Male 66 Input 62691 Male 69 Input 62703 Male 65 Input 62713 Female 67 Input 62749 Female 66 Input 62751 Female 65 Input 62768 Male 67 Input 62770 Female 69 Input 62773 Female 67 Input 62793 Female 68 Input 62841 Male 65 Input 62848 Male 66 Input 62850 Male 67 Input 62858 Female 68 Input 62866 Male 67 Input 62916 Female 66 Input 62920 Female 67 Input 62935 Female 68 Input 62955 Male 68 Input 62965 Female 65 Input 62975 Male 65 Input 63001 Male 66 Input 63010 Female 65 Input 63015 Male 68 Input 63026 Female 68 Input 63028 Female 65 Input 63035 Female 66 Input 63037 Male 67 Input 63040 Female 65 Input 63044 Female 65 Input 63053 Male 67 Input 63056 Male 66 Input 63068 Male 66 Input 63081 Female 67 Input 63121 Male 65 Input 63136 Male 65 Input 63187 Female 67 Input 63194 Male 65 Input 63218 Male 67 Input 63329 Female 67 Input 63348 Female 66 Input 63365 Male 68 Input 63407 Female 66 Input 63411 Male 67 Input 63429 Male 66 Input 63433 Female 65 Input 63434 Male 65 Input 63435 Female 68 Input 63450 Female 68 Input 63470 Male 68 Input 63471 Male 66 Input 63473 Male 67 Input 63490 Female 68 Input 63491 Female 69 Input 63492 Male 68 Input 63534 Female 64 Input 63545 Female 65 Input 63568 Female 69 Input 63575 Male 66 Input 63586 Female 67 Input 63636 Male 65 Input 63637 Male 66 Input 63649 Male 66 Input 63674 Female 69 Input 63693 Female 65 Input 63750 Female 65 Input 63755 Female 68 Input 63766 Male 66 Input 63770 Male 67 Input 63773 Male 65 Input 63801 Female 65 Input 63819 Male 64 Input 63842 Female 67 Input 63860 Female 67 Input 63870 Male 67 Input 63897 Female 65 Input 63909 Female 67 Input 63943 Female 68 Input 63973 Female 68 Input 63977 Female 67 Input 63988 Female 66 Input 64058 Male 65 Input 64060 Female 69 Input 64079 Female 68 Input 64092 Female 68 Input 64098 Male 65 Input 64110 Male 69 Input 64119 Female 67 Input 64123 Female 66 Input 64129 Male 68 Input 64186 Male 70 Input 64206 Female 68 Input 64212 Male 66 Input 64227 Female 68 Input 64243 Male 69 Input 64250 Male 66 Input 64264 Male 69 Input 64297 Female 67 Input 64310 Male 69 Input 64312 Female 66 Input 64318 Male 65 Input 64336 Female 67 Input 64346 Male 65 Input 64350 Male 66 Input 64370 Female 67 Input 64376 Male 68 Input 64387 Male 65 Input 64394 Female 69 Input 64406 Male 65 Input 64415 Male 65 Input 64431 Male 69 Input 64432 Female 64 Input 64469 Female 68 Input 64475 Male 64 Input 64488 Female 66 Input 64504 Male 68 Input 64531 Female 64 Input 64537 Female 64 Input 64542 Female 65 Input 64552 Female 67 Input 64590 Male 66 Input 64592 Female 68 Input 64596 Male 66 Input 64620 Male 69 Input 64625 Male 67 Input 64640 Male 64 Input 64657 Female 66 Input 64668 Female 66 Input 64680 Male 66 Input 64691 Male 67 Input 64706 Male 69 Input 64734 Male 67 Input 64745 Female 66 Input 64764 Female 66 Input 64781 Male 66 Input 64797 Male 66 Input 64798 Male 68 Input 64806 Male 67 Input 64812 Male 66 Input 64818 Male 66 Input 64824 Female 65 Input 64829 Male 67 Input 64843 Female 67 Input 64867 Female 68 Input 64868 Male 68 Input 64876 Male 68 Input 64884 Female 68 Input 64886 Male 69 Input 64897 Female 68 Input 64899 Male 65 Input 64910 Male 65 Input 64913 Female 68 Input 64937 Male 68 Input 64947 Female 65 Input 64961 Female 68 Input 64987 Male 67 Input 64997 Male 68 DefaultVariable age
GroupDescriptorFile 1 Class Male Class Female Variables immrec Input 60047 Female 10 Input 60092 Male 5 Input 60094 Female 11 Input 60129 Female 11 Input 60145 Male 11 Input 60155 Female 8 Input 60160 Male 7 Input 60241 Male 4 Input 60286 Female 7 Input 60326 Male 8 Input 60330 Male 11 Input 60345 Female 5 Input 60398 Male 5 Input 60408 Female 7 Input 60440 Male 7 Input 60442 Male 8 Input 60448 Male 6 Input 60452 Female 7 Input 60460 Female 8 Input 60463 Female 11 Input 60472 Female 13 Input 60482 Female 12 Input 60484 Female 15 Input 60491 Female 5 Input 60525 Female 7 Input 60538 Male 9 Input 60540 Female 7 Input 60541 Male 6 Input 60549 Male 13 Input 60553 Female 8 Input 60560 Male 4 Input 60629 Female 7 Input 60631 Female 7 Input 60644 Male 7 Input 60658 Male 12 Input 60664 Male 8 Input 60665 Female 10 Input 60667 Male 7 Input 60682 Female 7 Input 60689 Male 6 Input 60695 Male 6 Input 60697 Male 9 Input 60708 Female 8 Input 60719 Male 7 Input 60726 Male 7 Input 60728 Male 8 Input 60742 Female 5 Input 60751 Female 7 Input 60763 Female 10 Input 60766 Female 8 Input 60776 Female 4 Input 60782 Male 5 Input 60786 Male 7 Input 60788 Male 7 Input 60791 Female 8 Input 60813 Female 8 Input 60834 Male 5 Input 60838 Female 10 Input 60866 Male 12 Input 60876 Male 7 Input 60877 Female 9 Input 60887 Male 9 Input 60891 Female 7 Input 60893 Male 7 Input 60910 Male 6 Input 60913 Female 2 Input 60914 Female 10 Input 60915 Female 7 Input 60917 Female 6 Input 60936 Female 7 Input 60943 Female 5 Input 60966 Female 7 Input 60968 Male 9 Input 60977 Female 5 Input 61021 Female 9 Input 61057 Male 7 Input 61068 Female 7 Input 61083 Female 5 Input 61107 Male 7 Input 61121 Male 4 Input 61124 Male 6 Input 61160 Male 6 Input 61166 Male 7 Input 61187 Male 6 Input 61196 Female 6 Input 61198 Female 9 Input 61200 Female 9 Input 61204 Female 10 Input 61218 Female 7 Input 61225 Female 8 Input 61240 Female 7 Input 61242 Male 6 Input 61247 Male 9 Input 61259 Male 9 Input 61262 Male 4 Input 61270 Male 8 Input 61288 Female 6 Input 61290 Female 10 Input 61303 Male 7 Input 61320 Female 12 Input 61347 Male 6 Input 61358 Female 10 Input 61361 Male 11 Input 61384 Male 8 Input 61392 Female 9 Input 61400 Male 8 Input 61449 Female 9 Input 61478 Male 7 Input 61512 Female 10 Input 61523 Male 6 Input 61525 Male 9 Input 61527 Male 8 Input 61558 Male 9 Input 61564 Female 7 Input 61572 Male 7 Input 61573 Male 5 Input 61577 Female 7 Input 61581 Female 6 Input 61590 Male 6 Input 61611 Female 6 Input 61624 Female 6 Input 61627 Male 6 Input 61635 Male 8 Input 61639 Female 8 Input 61645 Male 7 Input 61650 Male 4 Input 61705 Female 12 Input 61706 Female 8 Input 61730 Male 8 Input 61742 Female 8 Input 61778 Female 8 Input 61782 Male 7 Input 61785 Female 6 Input 61793 Female 7 Input 61795 Female 9 Input 61801 Male 6 Input 61806 Female 6 Input 61830 Female 7 Input 61840 Male 7 Input 61858 Male 5 Input 61878 Male 6 Input 61884 Female 9 Input 61887 Female 5 Input 61895 Male 10 Input 61922 Male 5 Input 61927 Male 11 Input 61937 Female 8 Input 61940 Male 6 Input 61953 Male 9 Input 61958 Female 5 Input 61964 Male 9 Input 61966 Male 7 Input 61978 Male 9 Input 61998 Male 5 Input 62027 Male 6 Input 62044 Male 5 Input 62082 Female 8 Input 62104 Male 7 Input 62113 Female 10 Input 62162 Male 6 Input 62163 Male 7 Input 62181 Female 7 Input 62186 Female 8 Input 62188 Male 8 Input 62194 Male 10 Input 62195 Female 8 Input 62208 Female 10 Input 62242 Female 8 Input 62246 Female 8 Input 62251 Female 6 Input 62256 Male 5 Input 62267 Male 5 Input 62306 Female 6 Input 62346 Male 8 Input 62355 Male 8 Input 62390 Male 4 Input 62395 Female 9 Input 62416 Male 5 Input 62443 Male 8 Input 62465 Male 4 Input 62474 Male 6 Input 62480 Male 6 Input 62484 Male 7 Input 62496 Female 7 Input 62500 Male 6 Input 62516 Male 8 Input 62523 Female 6 Input 62529 Female 7 Input 62538 Male 7 Input 62571 Male 4 Input 62581 Female 8 Input 62585 Male 6 Input 62630 Male 7 Input 62640 Male 8 Input 62649 Female 5 Input 62671 Male 9 Input 62675 Male 10 Input 62685 Male 7 Input 62691 Male 5 Input 62703 Male 6 Input 62713 Female 6 Input 62749 Female 8 Input 62751 Female 6 Input 62768 Male 8 Input 62770 Female 8 Input 62773 Female 5 Input 62793 Female 7 Input 62841 Male 7 Input 62848 Male 5 Input 62850 Male 4 Input 62858 Female 5 Input 62866 Male 8 Input 62916 Female 8 Input 62920 Female 8 Input 62935 Female 6 Input 62955 Male 5 Input 62965 Female 9 Input 62975 Male 9 Input 63001 Male 7 Input 63010 Female 10 Input 63015 Male 7 Input 63026 Female 6 Input 63028 Female 10 Input 63035 Female 9 Input 63037 Male 6 Input 63040 Female 8 Input 63044 Female 9 Input 63053 Male 5 Input 63056 Male 6 Input 63068 Male 8 Input 63081 Female 8 Input 63121 Male 7 Input 63136 Male 7 Input 63187 Female 7 Input 63194 Male 6 Input 63218 Male 6 Input 63329 Female 4 Input 63348 Female 8 Input 63365 Male 7 Input 63407 Female 8 Input 63411 Male 7 Input 63429 Male 9 Input 63433 Female 5 Input 63434 Male 8 Input 63435 Female 8 Input 63450 Female 6 Input 63470 Male 6 Input 63471 Male 8 Input 63473 Male 8 Input 63490 Female 9 Input 63491 Female 6 Input 63492 Male 6 Input 63534 Female 12 Input 63545 Female 6 Input 63568 Female 10 Input 63575 Male 5 Input 63586 Female 5 Input 63636 Male 7 Input 63637 Male 5 Input 63649 Male 10 Input 63674 Female 8 Input 63693 Female 12 Input 63750 Female 7 Input 63755 Female 8 Input 63766 Male 6 Input 63770 Male 6 Input 63773 Male 4 Input 63801 Female 8 Input 63819 Male 2 Input 63842 Female 6 Input 63860 Female 7 Input 63870 Male 5 Input 63897 Female 6 Input 63909 Female 6 Input 63943 Female 9 Input 63973 Female 8 Input 63977 Female 7 Input 63988 Female 6 Input 64058 Male 6 Input 64060 Female 5 Input 64079 Female 9 Input 64092 Female 8 Input 64098 Male 7 Input 64110 Male 6 Input 64119 Female 4 Input 64123 Female 10 Input 64129 Male 7 Input 64186 Male 8 Input 64206 Female 9 Input 64212 Male 6 Input 64227 Female 10 Input 64243 Male 9 Input 64250 Male 4 Input 64264 Male 7 Input 64297 Female 7 Input 64310 Male 10 Input 64312 Female 9 Input 64318 Male 6 Input 64336 Female 7 Input 64346 Male 5 Input 64350 Male 6 Input 64370 Female 4 Input 64376 Male 7 Input 64387 Male 8 Input 64394 Female 7 Input 64406 Male 7 Input 64415 Male 6 Input 64431 Male 9 Input 64432 Female 7 Input 64469 Female 8 Input 64475 Male 7 Input 64488 Female 7 Input 64504 Male 7 Input 64531 Female 6 Input 64537 Female 6 Input 64542 Female 8 Input 64552 Female 11 Input 64590 Male 3 Input 64592 Female 7 Input 64596 Male 9 Input 64620 Male 9 Input 64625 Male 7 Input 64640 Male 8 Input 64657 Female 6 Input 64668 Female 4 Input 64680 Male 7 Input 64691 Male 7 Input 64706 Male 4 Input 64734 Male 4 Input 64745 Female 7 Input 64764 Female 7 Input 64781 Male 10 Input 64797 Male 7 Input 64798 Male 7 Input 64806 Male 8 Input 64812 Male 7 Input 64818 Male 9 Input 64824 Female 6 Input 64829 Male 8 Input 64843 Female 9 Input 64867 Female 6 Input 64868 Male 7 Input 64876 Male 5 Input 64884 Female 7 Input 64886 Male 6 Input 64897 Female 10 Input 64899 Male 4 Input 64910 Male 6 Input 64913 Female 12 Input 64937 Male 5 Input 64947 Female 9 Input 64961 Female 8 Input 64987 Male 11 Input 64997 Male 5 DefaultVariable immrec
GroupDescriptorFile 1 Class Male plus blue Class Female circle red Variables age immrec Input 60047 Female 68 10 Input 60092 Male 65 5 Input 60094 Female 69 11 Input 60129 Female 69 11 Input 60145 Male 68 11 Input 60155 Female 69 8 Input 60160 Male 66 7 Input 60241 Male 68 4 Input 60286 Female 65 7 Input 60326 Male 65 8 Input 60330 Male 69 11 Input 60345 Female 67 5 Input 60398 Male 65 5 Input 60408 Female 65 7 Input 60440 Male 65 7 Input 60442 Male 68 8 Input 60448 Male 66 6 Input 60452 Female 64 7 Input 60460 Female 69 8 Input 60463 Female 69 11 Input 60472 Female 65 13 Input 60482 Female 65 12 Input 60484 Female 67 15 Input 60491 Female 68 5 Input 60525 Female 65 7 Input 60538 Male 67 9 Input 60540 Female 68 7 Input 60541 Male 64 6 Input 60549 Male 69 13 Input 60553 Female 68 8 Input 60560 Male 67 4 Input 60629 Female 65 7 Input 60631 Female 66 7 Input 60644 Male 65 7 Input 60658 Male 66 12 Input 60664 Male 67 8 Input 60665 Female 64 10 Input 60667 Male 64 7 Input 60682 Female 67 7 Input 60689 Male 67 6 Input 60695 Male 67 6 Input 60697 Male 69 9 Input 60708 Female 67 8 Input 60719 Male 64 7 Input 60726 Male 67 7 Input 60728 Male 65 8 Input 60742 Female 69 5 Input 60751 Female 66 7 Input 60763 Female 69 10 Input 60766 Female 65 8 Input 60776 Female 69 4 Input 60782 Male 66 5 Input 60786 Male 67 7 Input 60788 Male 66 7 Input 60791 Female 67 8 Input 60813 Female 67 8 Input 60834 Male 66 5 Input 60838 Female 65 10 Input 60866 Male 66 12 Input 60876 Male 64 7 Input 60877 Female 68 9 Input 60887 Male 68 9 Input 60891 Female 66 7 Input 60893 Male 68 7 Input 60910 Male 68 6 Input 60913 Female 68 2 Input 60914 Female 67 10 Input 60915 Female 68 7 Input 60917 Female 68 6 Input 60936 Female 66 7 Input 60943 Female 65 5 Input 60966 Female 65 7 Input 60968 Male 67 9 Input 60977 Female 67 5 Input 61021 Female 67 9 Input 61057 Male 69 7 Input 61068 Female 67 7 Input 61083 Female 67 5 Input 61107 Male 64 7 Input 61121 Male 66 4 Input 61124 Male 68 6 Input 61160 Male 67 6 Input 61166 Male 68 7 Input 61187 Male 64 6 Input 61196 Female 66 6 Input 61198 Female 69 9 Input 61200 Female 67 9 Input 61204 Female 69 10 Input 61218 Female 65 7 Input 61225 Female 66 8 Input 61240 Female 66 7 Input 61242 Male 67 6 Input 61247 Male 67 9 Input 61259 Male 68 9 Input 61262 Male 65 4 Input 61270 Male 67 8 Input 61288 Female 69 6 Input 61290 Female 67 10 Input 61303 Male 66 7 Input 61320 Female 66 12 Input 61347 Male 68 6 Input 61358 Female 66 10 Input 61361 Male 66 11 Input 61384 Male 66 8 Input 61392 Female 65 9 Input 61400 Male 65 8 Input 61449 Female 69 9 Input 61478 Male 65 7 Input 61512 Female 67 10 Input 61523 Male 67 6 Input 61525 Male 66 9 Input 61527 Male 66 8 Input 61558 Male 67 9 Input 61564 Female 67 7 Input 61572 Male 69 7 Input 61573 Male 66 5 Input 61577 Female 67 7 Input 61581 Female 66 6 Input 61590 Male 68 6 Input 61611 Female 66 6 Input 61624 Female 66 6 Input 61627 Male 69 6 Input 61635 Male 68 8 Input 61639 Female 65 8 Input 61645 Male 66 7 Input 61650 Male 66 4 Input 61705 Female 65 12 Input 61706 Female 65 8 Input 61730 Male 65 8 Input 61742 Female 65 8 Input 61778 Female 65 8 Input 61782 Male 66 7 Input 61785 Female 65 6 Input 61793 Female 66 7 Input 61795 Female 68 9 Input 61801 Male 66 6 Input 61806 Female 66 6 Input 61830 Female 68 7 Input 61840 Male 66 7 Input 61858 Male 66 5 Input 61878 Male 67 6 Input 61884 Female 65 9 Input 61887 Female 66 5 Input 61895 Male 67 10 Input 61922 Male 64 5 Input 61927 Male 67 11 Input 61937 Female 65 8 Input 61940 Male 67 6 Input 61953 Male 65 9 Input 61958 Female 69 5 Input 61964 Male 69 9 Input 61966 Male 66 7 Input 61978 Male 67 9 Input 61998 Male 65 5 Input 62027 Male 68 6 Input 62044 Male 65 5 Input 62082 Female 66 8 Input 62104 Male 65 7 Input 62113 Female 68 10 Input 62162 Male 66 6 Input 62163 Male 65 7 Input 62181 Female 65 7 Input 62186 Female 65 8 Input 62188 Male 67 8 Input 62194 Male 66 10 Input 62195 Female 65 8 Input 62208 Female 66 10 Input 62242 Female 67 8 Input 62246 Female 65 8 Input 62251 Female 68 6 Input 62256 Male 65 5 Input 62267 Male 65 5 Input 62306 Female 67 6 Input 62346 Male 69 8 Input 62355 Male 68 8 Input 62390 Male 67 4 Input 62395 Female 65 9 Input 62416 Male 67 5 Input 62443 Male 68 8 Input 62465 Male 65 4 Input 62474 Male 64 6 Input 62480 Male 69 6 Input 62484 Male 65 7 Input 62496 Female 64 7 Input 62500 Male 66 6 Input 62516 Male 66 8 Input 62523 Female 66 6 Input 62529 Female 64 7 Input 62538 Male 69 7 Input 62571 Male 65 4 Input 62581 Female 67 8 Input 62585 Male 69 6 Input 62630 Male 67 7 Input 62640 Male 66 8 Input 62649 Female 66 5 Input 62671 Male 65 9 Input 62675 Male 67 10 Input 62685 Male 66 7 Input 62691 Male 69 5 Input 62703 Male 65 6 Input 62713 Female 67 6 Input 62749 Female 66 8 Input 62751 Female 65 6 Input 62768 Male 67 8 Input 62770 Female 69 8 Input 62773 Female 67 5 Input 62793 Female 68 7 Input 62841 Male 65 7 Input 62848 Male 66 5 Input 62850 Male 67 4 Input 62858 Female 68 5 Input 62866 Male 67 8 Input 62916 Female 66 8 Input 62920 Female 67 8 Input 62935 Female 68 6 Input 62955 Male 68 5 Input 62965 Female 65 9 Input 62975 Male 65 9 Input 63001 Male 66 7 Input 63010 Female 65 10 Input 63015 Male 68 7 Input 63026 Female 68 6 Input 63028 Female 65 10 Input 63035 Female 66 9 Input 63037 Male 67 6 Input 63040 Female 65 8 Input 63044 Female 65 9 Input 63053 Male 67 5 Input 63056 Male 66 6 Input 63068 Male 66 8 Input 63081 Female 67 8 Input 63121 Male 65 7 Input 63136 Male 65 7 Input 63187 Female 67 7 Input 63194 Male 65 6 Input 63218 Male 67 6 Input 63329 Female 67 4 Input 63348 Female 66 8 Input 63365 Male 68 7 Input 63407 Female 66 8 Input 63411 Male 67 7 Input 63429 Male 66 9 Input 63433 Female 65 5 Input 63434 Male 65 8 Input 63435 Female 68 8 Input 63450 Female 68 6 Input 63470 Male 68 6 Input 63471 Male 66 8 Input 63473 Male 67 8 Input 63490 Female 68 9 Input 63491 Female 69 6 Input 63492 Male 68 6 Input 63534 Female 64 12 Input 63545 Female 65 6 Input 63568 Female 69 10 Input 63575 Male 66 5 Input 63586 Female 67 5 Input 63636 Male 65 7 Input 63637 Male 66 5 Input 63649 Male 66 10 Input 63674 Female 69 8 Input 63693 Female 65 12 Input 63750 Female 65 7 Input 63755 Female 68 8 Input 63766 Male 66 6 Input 63770 Male 67 6 Input 63773 Male 65 4 Input 63801 Female 65 8 Input 63819 Male 64 2 Input 63842 Female 67 6 Input 63860 Female 67 7 Input 63870 Male 67 5 Input 63897 Female 65 6 Input 63909 Female 67 6 Input 63943 Female 68 9 Input 63973 Female 68 8 Input 63977 Female 67 7 Input 63988 Female 66 6 Input 64058 Male 65 6 Input 64060 Female 69 5 Input 64079 Female 68 9 Input 64092 Female 68 8 Input 64098 Male 65 7 Input 64110 Male 69 6 Input 64119 Female 67 4 Input 64123 Female 66 10 Input 64129 Male 68 7 Input 64186 Male 70 8 Input 64206 Female 68 9 Input 64212 Male 66 6 Input 64227 Female 68 10 Input 64243 Male 69 9 Input 64250 Male 66 4 Input 64264 Male 69 7 Input 64297 Female 67 7 Input 64310 Male 69 10 Input 64312 Female 66 9 Input 64318 Male 65 6 Input 64336 Female 67 7 Input 64346 Male 65 5 Input 64350 Male 66 6 Input 64370 Female 67 4 Input 64376 Male 68 7 Input 64387 Male 65 8 Input 64394 Female 69 7 Input 64406 Male 65 7 Input 64415 Male 65 6 Input 64431 Male 69 9 Input 64432 Female 64 7 Input 64469 Female 68 8 Input 64475 Male 64 7 Input 64488 Female 66 7 Input 64504 Male 68 7 Input 64531 Female 64 6 Input 64537 Female 64 6 Input 64542 Female 65 8 Input 64552 Female 67 11 Input 64590 Male 66 3 Input 64592 Female 68 7 Input 64596 Male 66 9 Input 64620 Male 69 9 Input 64625 Male 67 7 Input 64640 Male 64 8 Input 64657 Female 66 6 Input 64668 Female 66 4 Input 64680 Male 66 7 Input 64691 Male 67 7 Input 64706 Male 69 4 Input 64734 Male 67 4 Input 64745 Female 66 7 Input 64764 Female 66 7 Input 64781 Male 66 10 Input 64797 Male 66 7 Input 64798 Male 68 7 Input 64806 Male 67 8 Input 64812 Male 66 7 Input 64818 Male 66 9 Input 64824 Female 65 6 Input 64829 Male 67 8 Input 64843 Female 67 9 Input 64867 Female 68 6 Input 64868 Male 68 7 Input 64876 Male 68 5 Input 64884 Female 68 7 Input 64886 Male 69 6 Input 64897 Female 68 10 Input 64899 Male 65 4 Input 64910 Male 65 6 Input 64913 Female 68 12 Input 64937 Male 68 5 Input 64947 Female 65 9 Input 64961 Female 68 8 Input 64987 Male 67 11 Input 64997 Male 68 5 DefaultVariable age
$Id: mri_glmfit.c,v 1.138.2.1 2007/09/12 15:38:19 nicks Exp $ cwd /media/storage2/proc/freesurfer/60_w2/checked/analysis cmdline mri_glmfit --y lh.gender_age_immrec.thickness.10.mgh --fsgd gender_age_immrec_fsgd.txt doss --glmdir lh.gender_age_immrec.glmdir --surf average100 lh --C gender_age_immrec.mat sysname Linux hostname mri-lab machine x86_64 user u3184049 FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /media/storage2/proc/freesurfer/60_w2/checked/analysis/lh.gender_age_immrec.thickness.10.mgh logyflag 0 usedti 0 FSGD gender_age_immrec_fsgd.txt glmdir lh.gender_age_immrec.glmdir DoFFx 0
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer