Re: [Freesurfer] Extracting significant regions - Longitudinal two stage model

what do you mean "extract" the cluster? Do you want mean thickness for each cluster? Or the mean contrast? Of all the voxels in a cluster? For the first two, you can use something like mri_segstats --seg clusterseg.mgz --i contrast.mgz --sum summary.txt

On 3/26/2024 9:47 AM, Liliana Wu wrote:

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Hi,

I ran a longitudinal two stage model analysis in 83 participants comparing two groups. After applying cluster correction, I am seeing several significant regions, and I was wondering if there is a way to extract each significant cluster from each participant.

I appreciate any help!

Thank you,

Liliana

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