Hi Sourena
the inflated.H is the mean curvature of the inflated surface and can be used to guide initial large-scale alignment. I think it is generated by the current recon-all, but Nick can correct me if not. You can create them using mris_curvature
cheers Bruce
On Sat, 18 Aug 2012, Sourena Soheilinezhad wrote:
Hi experts,
I have tried this syntax for making a surface template: mris_make template ?h sphere subj1 subj2 subj3 my_template.tiff
Output is an error saying "Could not read curvature file: ?h.infalted.H"
But searching in the /surf directory for .H file, I have added "-infname white_avg" to the command and it seems to run smoothly. My question is, what is this .H file? Should I safely ignore the default search for inflated.H and keep on using white_avg.H instead? Also, the make_average_surface command gives the same "missing .H file" error but this time there is no -infname parameter to be manipulated.
Thanks in advance, Sourena _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer