Dear Khoa and Bruce,
thanks for replying so fast. The wm.mgz does not look correct either.
I have uploaded the subject using the second option.
Thanks again, Irene
Le lundi 06 juin 2011 à 07:46 -0400, Khoa Nguyen a écrit :
Hi Irene,
Is the wm segmentation correct in the wm.mgz? If you want, you can upload the subject and I can take a look.
You can try using this website http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
If that doesn't work, try this one https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
-Khoa
On Mon, 6 Jun 2011, Irene Altarelli wrote:
Dear Freesurfers,
we are processing a dataset of children through recon-all, applying manual corrections when needed.
For one subject, after manual correction and running autorecon2-cp, we observe errors in wm segmentation, bilaterally, with portions of gm included in wm - as can be seen in the attached picture. This concerns most of the coronal slices. We have been checking that control points were not misplaced and they look ok to us.
What do you think is happening there and is there anything we can try before manually correcting these errors?
Thanks very much in advance, Irene
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