You can add --aparc+aseg (hit 'c' to toggle on and off), alternatively You can use tkregsiterfv (same command arguments) but add -aparc+aseg -seg-outline You will need to use the lta registration file (not the .dat)
On 3/29/2021 6:13 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurferers,
I have a question and I appreciate it much if you could please reply. I need to know how to check *subcortical* functional to anatomical registration. I know for checking the cortical registration I can use the below command:
tkregister2 --s $subj --mov template.nii.gz --surf --reg init.register.dof6.dat
Could you please tell me what command should I use to check the registration in subcortex?
Thanks MOna
*Zahra (Mona) Nasiriavanaki, M.D.* Postdoctoral Research Fellow Department of Psychiatry Massachusetts General Hospital 149 13th Street, 149-2615 Boston, MA, USA, 02129
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