Interesting.. would you mind sending me the command you ran and file drop the input and output volumes to me?: https://gate.nmr.mgh.harvard.edu/filedrop2/
Emma
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fereshte fereshte.ramezani@gmail.com Sent: Sunday, October 15, 2017 6:43:08 AM To: Freesurfer support list Subject: Re: [Freesurfer] Extracting labels using mri_watershed
Hi Emma, I've tried this before but surprisingly not such labels in the output volume.
On Wed, Oct 11, 2017 at 9:03 PM Boyd, Emma <EBOYD2@mgh.harvard.edumailto:EBOYD2@mgh.harvard.edu> wrote: Hi Fereshte,
mri_watershed -LABEL inputvolume.mgz outputvolume.mgz
The output volume will contain 6 labels: 0 = exterior 1 = scalp 2 = skull 3 = csf 4 = gray 5 = white 6 = fat tissue
Emma
On Oct 11, 2017, at 3:38 AM, Fereshte <fereshte.ramezani@gmail.commailto:fereshte.ramezani@gmail.com> wrote:
Dear Experts, How is it possible to extract labels like scalp and skull using -LABEL flag in mri_watershed ? Thanks for your attention.
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