Dear All,
I'm having issues with the pial surface - temporal lobe is being under-estimated (see wm-pial.png) where the red cross is. (Frontal lobe also has similar issues.) In wm.mgz, the white matter looks fine, as well as in aseg.mgz (see aseg-wm-pial.png) but just not the pial boundary.
What can I do to rectify this?
On a side note, I've tried adding control points (to the frontal lobe to solve a similar problem) but the pial boundary still does not cover the gray matter and I'm missing bits.
Thank you.
Kind regards, Joann