Hi Stephanie
specifying "pial" directs it to use the ?h.pial surfaces for e.g. surface area measurement. What information are you hoping to extract from the orig.mgz?
cheers Bruce
On Thu, 17 Jan 2019, Winkelbeiner, Stephanie A wrote:
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Hi Freesurfers,
I’m using the below command to extract GM values:
mris_anatomical_stats -mgz \
-cortex label/lh.cortex.label \
-f stats/lh.250.aparc.pial.stats \
-b -a 250.aparc \
-c label/colortable.ctab \
$subject lh pial
Specifying “pial” which image does the command actually use? The mri/orig.mgz?
Thanks for your help!
Stephanie
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