Are you sure? Did you flip back and forth between this and a volume with the skull?
On Aug 25, 2014, at 7:13 AM, Mads Jensen mje.mads@gmail.com wrote:
Hi Bruce (and the rest of the list),
It looks better (see attached) but it still look like it removed too much.
cheers for the point though, Mads
On 21/08/14 16:22, Bruce Fischl wrote: Hi Mads
what does it look like if you move off the mideline? Or check a coronal view? Sagittal views of the midline are notoriously bad for judging skull stripping accuracy
cheers Bruce
On Tue, 19 Aug 2014, Mads Jensen wrote:
Dear list,
I have problem with the brainmask from a subject where there is removed to much of the gray matter. So, I would like to hear if someone has a good idea where I should start to fix this issue?
I have attached a jpgs of the brainmask and orig, and a link to the recon-all.log
best regards, mads
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