14 May
2019
14 May
'19
3:04 p.m.
External Email - Use Caution
Hello freesurfers, Our lab has been using freesurfer 5.3 for a while. We use the following flag when we run the initial recon-all
-mprage -hippo-subfields -qcache -cortparc3 -parcstats3 -cubic -pctsurfcon -custom-tal-atlas TRIO_PIB_NDC_as_mni_average_305
However i have found out that we do not use any of these flags when we have we rerun recon-all after making standard edits. So my question is do any of these flags need to be used when rerun recon-all?