External Email - Use Caution
Hi Pedro,
You need to provide full path to your .nii files.
You also need to set environment variable SUBJECTS_DIR to the directory you have write permission.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Pedro henrique barradas Sent: Monday, May 1, 2023 12:06 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Cannot find subject for recon-all
External Email - Use Caution
Hello! I have recently installed freesurfer and was attempting to reconstruc some exams but I keep getting this error message
Pedros-Air:subjects pedrobarradas$ recon-all -i 01.nii. -s test1 -all
ERROR: cannot find 01.nii.
recon-all -s exited with ERRORS at Mon May 1 16:51:37 WEST 2023
For more details, see the log file
To report a problem, see http://secure-web.cisco.com/1RNbgC5ak4nQL1JrC4tKj3GSvCQkHEsU7ie26A1Ir2qdWeoy...
I'm not sure what I am doing wrong. Any help would be tremendousy appreciated.
Best Wishes Pedro Barradas