Dear. Freesurfer experts.
Hi.
I'm using freesurfer version 5.3.0.
I tried:
mkanalysis-sess -analysis retino -TR 2 -paradigm para.para -event-related -funcstem fmc -nconditions 4 -timewindow 34 -inorm -gammafit 2.25 1.25 -polyfit 2 -mcextreg -force -fsd bold_retino -per-run -native -refeventdur 8
mkcontrast-sess -analysis retino -contrast HorVer -a 1 -c 2
preproc-sess -s $SUBJECT -df sessdirfile -fsd bold_retino -nosmooth -per-run
selxavg-sess -s $SUBJECT -analysis retino -df sessdirfile -noomnibus
Then at the selxavg-sess process, I got the error:
INFO: WhitenFlag = 0 -------------------------------------------------------------- selxavg-sess logfile is /home/jbang/Projects/replay/log/log/selxavg-sess-bold_retino-retino-160308143510.log -------------------------------------------------------------- ------------------------------------------- /home/jbang/Projects/replay/epi/replay06 Tue Mar 8 14:35:10 EST 2016 ERROR: could not find volume ERROR:. Does it exist? (standard_in) 1: syntax error ERROR: could not find volume ERROR:. Does it exist? inplaneres TR INFO (replay06): RunList = 023 025 027 029 -------------------------------------------------------- /home/jbang/Projects/replay/epi/replay06/bold_retino selxavg2 -TR -parname para.para -o retino/h -i 023/fmc -i 025/fmc -i 027/fmc -i 029/fmc -cfg /home/jbang/Projects/replay/log/retino/analysis.cfg -------------------------------------------------------- --- Parsing Config File: /home/jbang/Projects/replay/log/retino/analysis.cfg ---- -gammafit 2.25 1.25 -timewindow 34 -prestim 0 -polyfit 2 -TER 2 -nskip 0 -fwhm 0 -extreg mcextreg -nextreg 3 -rescale 1000 ERROR: Flag 3 unrecognized. -gammafit 2.25 1.25 -timewindow 34 -prestim 0 -polyfit 2 -TER 2 -nskip 0 -fwhm 0 -extreg mcextreg -nextreg 3 -rescale 1000 -TR -parname para.para -o retino/h -i 023/fmc -i 025/fmc -i 027/fmc -i 029/fmc -cfg /home/jbang/Projects/replay/log/retino/analysis.cfg ERROR (/home/jbang/Projects/replay/epi/replay06): selxavg failed
Could you please hlep what's going wrong?
Thank you very much!
Best, Ji Won