run it like this
mris_preproc --debug --fsgd fsgd/HRR60.fsgd ...
doug
On 11/05/2014 05:32 PM, Cooke, Gillian wrote:
Unfortunately I'm getting this error in the terminal:
bash: --debug: command not found
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, November 05, 2014 4:26 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_preproc error
Can you run it with --debug as the first argument and send the terminal output? doug
On 11/05/2014 04:21 PM, Cooke, Gillian wrote:
Hi All,
I am getting a consistent error when I try to run mris_preproc - I'm baffled as I've used all of my scripts and fsgd files before.
There are 2 groups with 3 covariates but I keep getting this error:
mris_preproc --fsgd fsgd/HRR60.fsgd --cache-in thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out mris_preproc/lh.HRR60.thickness.10.mgh
ERROR: no subjects specified
But my fsgd file lists all subject numbers:
GroupDescriptorFile 1
Title ACCE HRR60
Class Control
Class Cancer
VariablesAge_demeanedEd_demeanedHRR60
Input505_1Cancer-5.631.543
Input506_1Cancer7.373.553
Input509_1Cancer4.37-0.544
Input517_1Cancer-20.63-1.538
Input518_1Cancer-4.63-2.535
Input520_1Cancer0.371.537
Input521_1Control3.371.549
Input524_1Cancer3.37-0.532
Input525_1Control-12.63-2.551
#Input528_1Cancer10.373.5
Input529_1Control-28.634.532
Input530_1Cancer1.371.524
Input531_1Cancer6.377.555
Input532_1Cancer-1.631.514
Input533_1Cancer-10.633.536
Input534_1Control-3.631.525
Input536_1Control-11.63047
Input547_1Control10.371.525
Input548_1Control-18.63-0.546
Input549_1Cancer-21.63-0.538
Input554_1Control-21.63-0.538
Input558_1Cancer9.37-1.524
Input563_1Control0.370.530
Input564_1Control7.371.514
Any help is greatly appreciated!
Gill
Gillian Cooke, Ph.D.
Postdoctoral Research Associate
Lifelong Brain & Cognition Lab
Decision Neuroscience Lab
Beckman Institute
University of Illinois, Urbana
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