Hi Michelle
func.nii is the functional data you want to register, and the register.dat is the output of bbregister.
cheers Bruce
On Mon, 1 Aug 2011, Michelle Umali wrote:
Hi Bruce, So for the following command: bbregister --s bert --mov func.nii --init-fsl --reg register.dat tkregister2 --mov func.nii --reg register.dat --surf
In the case of a retinotopy analysis, which files are register.dat and func.nii?
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
[Hide Quoted Text] Hi Michelle Try using bbregister.
Cheers Bruce
On Jul 31, 2011, at 6:54 PM, Michelle Umali muu1@columbia.edu wrote: Dear Freesurfers, During my retinotopy analysis, I was getting very strange fieldsign data (blue and red speckles) and my polar and eccentricity data was limited to the occipital pole. It was suggested that I check registration between the functional and anatomical.
I was looking up tkregister2 help to figure this out but am still unsure how to register the polar and eccentricity data to the anatomical.
Any help would be most appreciated.
-Michelle Umali _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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