19 Jul
2014
19 Jul
'14
1:26 p.m.
Dear mailing list,
I am doing the group analysis freesurfer tutorial. When I try to open the significance map, I get the error message "unrecognized sub-opton flag 'overlay_threshold'. "
The command is freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/sig.mgh:overlay_threshold=4,5 -viewport 3d
I get the same error message doing the tutorial on my mac os x and on a linux, so I doubt there is a problem with the tutorial data. All files needed seem to be in the directory.
I very much appreciate any help
Best, Vilde