I think I fixed it last night, can you try again?
doug
On Fri, 7 Sep 2007, Jenn Segawa wrote:
Hi,
Sorry if this is redundant, I think I'm having the same segmentation problem as others last week, with the mri_convert command I've previously used (with Unix) with no problem. I've tried setenv trick that was previously suggested, but it didn't make any difference. Has anyone had any luck with it?
Thanks, Jenn
recon-all -autorecon1 -s PROZ06006 -i /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-3-1.dcm -i /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000- 4-1.dcm -i /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-5-1.dcm -i /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-6-1.dcm
YIELDS:
INFO: SUBJECTS_DIR is /autofs/space/multnomah_003/users/gow/PROZ06/MRI Actual FREESURFER_HOME /autofs/space/freesurfer/centos4.0/stable4 Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386 GNU/Linux /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006
mri_convert /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810 00-3-1.dcm/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/0 01.mgz
mri_convert /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/68100 0-3-1.dcm/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/00 1.mgz $Id: mri_convert.c,v 1.146 2007/07/26 19:26:26 greve Exp $ reading from /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810 00-3-1.dcm... Getting Series No INFO: Found 2352 files in /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/P ROZ06006 INFO: Scanning for Series Number 3 Scanning Directory INFO: found 128 files in series INFO: loading series header info.
RunNo = 2 INFO: sorting. INFO: (256 256 128), nframes = 1, ismosaic=0 AutoAlign matrix detected AutoAlign Matrix --------------------- 0.994 -0.056 -0.090 -8.971 ; 0.036 0.977 -0.211 -13.941; 0.100 0.207 0.973 5.321; 0.000 0.000 0.000 1.000;
MGH DTI SeqPack Info 0 *tfl3d1_ns 0.000000 0 1 *tfl3d1_ns 0.000000 0 2 *tfl3d1_ns 0.000000 0 3 *tfl3d1_ns 0.000000 0 4 *tfl3d1_ns 0.000000 0 5 *tfl3d1_ns 0.000000 0 6 *tfl3d1_ns 0.000000 0 7 *tfl3d1_ns 0.000000 0 8 *tfl3d1_ns 0.000000 0 9 *tfl3d1_ns 0.000000 0 10 *tfl3d1_ns 0.000000 0 11 *tfl3d1_ns 0.000000 0 12 *tfl3d1_ns 0.000000 0 13 *tfl3d1_ns 0.000000 0 14 *tfl3d1_ns 0.000000 0 15 *tfl3d1_ns 0.000000 0 16 *tfl3d1_ns 0.000000 0 17 *tfl3d1_ns 0.000000 0 18 *tfl3d1_ns 0.000000 0 19 *tfl3d1_ns 0.000000 0 20 *tfl3d1_ns 0.000000 0 21 *tfl3d1_ns 0.000000 0 22 *tfl3d1_ns 0.000000 0 23 *tfl3d1_ns 0.000000 0 24 *tfl3d1_ns 0.000000 0 25 *tfl3d1_ns 0.000000 0 26 *tfl3d1_ns 0.000000 0 27 *tfl3d1_ns 0.000000 0 28 *tfl3d1_ns 0.000000 0 29 *tfl3d1_ns 0.000000 0 30 *tfl3d1_ns 0.000000 0 31 *tfl3d1_ns 0.000000 0 32 *tfl3d1_ns 0.000000 0 33 *tfl3d1_ns 0.000000 0 34 *tfl3d1_ns 0.000000 0 35 *tfl3d1_ns 0.000000 0 36 *tfl3d1_ns 0.000000 0 37 *tfl3d1_ns 0.000000 0 38 *tfl3d1_ns 0.000000 0 39 *tfl3d1_ns 0.000000 0 40 *tfl3d1_ns 0.000000 0 41 *tfl3d1_ns 0.000000 0 42 *tfl3d1_ns 0.000000 0 43 *tfl3d1_ns 0.000000 0 44 *tfl3d1_ns 0.000000 0 45 *tfl3d1_ns 0.000000 0 46 *tfl3d1_ns 0.000000 0 47 *tfl3d1_ns 0.000000 0 48 *tfl3d1_ns 0.000000 0 49 *tfl3d1_ns 0.000000 0 50 *tfl3d1_ns 0.000000 0 51 *tfl3d1_ns 0.000000 0 52 *tfl3d1_ns 0.000000 0 53 *tfl3d1_ns 0.000000 0 54 *tfl3d1_ns 0.000000 0 55 *tfl3d1_ns 0.000000 0 56 *tfl3d1_ns 0.000000 0 57 *tfl3d1_ns 0.000000 0 58 *tfl3d1_ns 0.000000 0 59 *tfl3d1_ns 0.000000 0 60 *tfl3d1_ns 0.000000 0 61 *tfl3d1_ns 0.000000 0 62 *tfl3d1_ns 0.000000 0 63 *tfl3d1_ns 0.000000 0 64 *tfl3d1_ns 0.000000 0 65 *tfl3d1_ns 0.000000 0 66 *tfl3d1_ns 0.000000 0 67 *tfl3d1_ns 0.000000 0 68 *tfl3d1_ns 0.000000 0 69 *tfl3d1_ns 0.000000 0 70 *tfl3d1_ns 0.000000 0 71 *tfl3d1_ns 0.000000 0 72 *tfl3d1_ns 0.000000 0 73 *tfl3d1_ns 0.000000 0 74 *tfl3d1_ns 0.000000 0 75 *tfl3d1_ns 0.000000 0 76 *tfl3d1_ns 0.000000 0 77 *tfl3d1_ns 0.000000 0 78 *tfl3d1_ns 0.000000 0 79 *tfl3d1_ns 0.000000 0 80 *tfl3d1_ns 0.000000 0 81 *tfl3d1_ns 0.000000 0 82 *tfl3d1_ns 0.000000 0 83 *tfl3d1_ns 0.000000 0 84 *tfl3d1_ns 0.000000 0 85 *tfl3d1_ns 0.000000 0 86 *tfl3d1_ns 0.000000 0 87 *tfl3d1_ns 0.000000 0 88 *tfl3d1_ns 0.000000 0 89 *tfl3d1_ns 0.000000 0 90 *tfl3d1_ns 0.000000 0 91 *tfl3d1_ns 0.000000 0 92 *tfl3d1_ns 0.000000 0 93 *tfl3d1_ns 0.000000 0 94 *tfl3d1_ns 0.000000 0 95 *tfl3d1_ns 0.000000 0 96 *tfl3d1_ns 0.000000 0 97 *tfl3d1_ns 0.000000 0 98 *tfl3d1_ns 0.000000 0 99 *tfl3d1_ns 0.000000 0 100 *tfl3d1_ns 0.000000 0 101 *tfl3d1_ns 0.000000 0 102 *tfl3d1_ns 0.000000 0 103 *tfl3d1_ns 0.000000 0 104 *tfl3d1_ns 0.000000 0 105 *tfl3d1_ns 0.000000 0 106 *tfl3d1_ns 0.000000 0 107 *tfl3d1_ns 0.000000 0 108 *tfl3d1_ns 0.000000 0 109 *tfl3d1_ns 0.000000 0 110 *tfl3d1_ns 0.000000 0 111 *tfl3d1_ns 0.000000 0 112 *tfl3d1_ns 0.000000 0 113 *tfl3d1_ns 0.000000 0 114 *tfl3d1_ns 0.000000 0 115 *tfl3d1_ns 0.000000 0 116 *tfl3d1_ns 0.000000 0 117 *tfl3d1_ns 0.000000 0 118 *tfl3d1_ns 0.000000 0 119 *tfl3d1_ns 0.000000 0 120 *tfl3d1_ns 0.000000 0 121 *tfl3d1_ns 0.000000 0 122 *tfl3d1_ns 0.000000 0 123 *tfl3d1_ns 0.000000 0 124 *tfl3d1_ns 0.000000 0 125 *tfl3d1_ns 0.000000 0 126 *tfl3d1_ns 0.000000 0 127 *tfl3d1_ns 0.000000 0 Segmentation fault Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Fri Sep 7 11:47:14 EDT 2007