Dear FS experts
we are running TRACULA on a Mac (OS X 10.7.5) and faced an error related to mri_convert.
we then donloaded (as suggested in the FS archives) the modified file mri_convert.mac from here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
and the initial error disappeared.
However, when running trac-all FS claims that the license is not valid anymore, although there is no error when running recon-all.
[Tschgiallos-iMac-2:~] tschgiallo% trac-all -prep -c /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/tracula_config_dudo.txt INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects INFO: Diffusion root is /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results Actual FREESURFER_HOME /Applications/freesurfer trac-preproc -c /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/dmrirc.local -log /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/trac-all.log -cmd /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/trac-all.cmd #------------------------------------- /Applications/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mo 16 Nov 2015 09:57:39 CET mri_convert /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/dmri/dwi_orig.nii.gz mri_convert /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/dmri/dwi_orig.nii.gz -------------------------------------------------------------------------- ERROR: Invalid FreeSurfer license key found in license file /Applications/freesurfer/.license If you are outside the NMR-Martinos Center, go to http://surfer.nmr.mgh.harvard.edu/registration.html to get a valid license file (it's free). If you are inside the NMR-Martinos Center, make sure to source the standard environment. -------------------------------------------------------------------------- $Id: mri_convert.c,v 1.222 2015/06/08 18:22:26 greve Exp $ reading from /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz... Darwin Tschgiallos-iMac-2.local 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64
trac-preproc exited with ERRORS at Mo 16 Nov 2015 09:57:40 CET
[Tschgiallos-iMac-2:~] tschgiallo%
Any idea where the problem is?
Thanks in advance Regards Jürgen
----------------------------------------------------------------------------------------------------- University of Zurich Dr. Jürgen Hänggi, Ph.D. Department of Psychology Division Neuropsychology Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland
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