Hi,
I've been using Freesurfer's 'recon-all' function to process T1 datasets of healthy age-matched, MCI and early-onset Alzheimer's brains. It has been successful with the two healthy controls I've tried, but only half of the MCI and EAD brains work - Freesurfer fails and exits 'with errors'.
We think that the reason for this may be due to the severe atrophy going on in the MCI and EAD brains, but are not sure - does anybody have any suggestions for why Freesurfer keeps failing?
Thanks,
Heather