Hi list, I'm performing recon-all -all -notal-check -i $SUBJECTS_DIR/T1_STRUCT.nii.gz -subject SUBJECTS_DIR -cw256 on a T1 with following info:data_type INT16dim1 280dim2 240dim3 240dim4 1datatype 4pixdim1 0.5999908447pixdim2 1.0416666269pixdim3 1.0416666269pixdim4 0.0000000000cal_max 0.0000cal_min 0.0000file_type NIFTI-1+ and I have this error (2) Problem with the least square interpolation for CSF_MAX GLOBAL CSF_MIN=0, CSF_intensity=6, CSF_MAX=55 , nb = 36036 RIGHT_CER CSF_MIN=0, CSF_intensity=6, CSF_MAX=39 , nb = 3042 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=32 , nb = 3852 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=41, CSF_MAX=179 , nb = 14652 LEFT_BRAIN CSF_MIN=0, CSF_intensity=41, CSF_MAX=99 , nb = 14058 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=12 , nb = 432mri_watershed Error: GLOBAL region of the brain empty !Darwin iMac-di-Stefano.local 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64 recon-all -s SUBJECTS_DIR exited with ERRORS at Fri May 24 00:04:27 CEST 2013 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Complete .log file is also attached. What's happen? Thanks,
Stefano