Freesurfer team, I have run a group of subjects through the recon-all pipeline with the lgi option. I then looked at differences between two groups in qdec and ran a cluster correction. I would now like to extract the lgi statistics for 3 of these clusters. I have label files for these areas and tried using mris_anatomical_stats to calculate the lgi values. The script runs fine but does not appear to replace the cortical thickness values with lgi values. Below is the script I used to test it on subject "subj". Am I doing something incorrectly? Thank you.
mris_anatomical_stats -l LGI_lh_001.label -t pial_lgi -f subj/stats/lh.aparc_lgi_cluster1.stats subj lh
Briana
-- Briana Robustelli Post-Baccalaureate IRTA Laboratory of Brain and Cognition, NIMH/NIH/DHHS Building 10, Room 4C103 10 Center Dr MSC 1366 Bethesda, MD 20892 Phone: (301) 435-4491 Briana.Robustelli@nih.gov