If it is not using the basename.m in freesurfer it may fail. Try putting $FREESURFER_HOME/fsfast/toolbox first in your matlab path
On 06/22/2014 02:52 PM, Xiaomin Yue wrote:
Hi Doug
Thanks for you response. The command line is: selxavg3-sess -s subject_0101 -d . -analysis DoD_looming_lh.
I checked the basename function in the matlab installed in my computer, which is 2010b. It seems that the basename in the 2010b matlab only accepts one parameter. I tried two ways to avoid the problem. First, I replaced the matlab's basename function with my own basename function. Second, I removed the motion regressor from the analysis.info. The two method indeed avoided the basename function error, but new errors were created as the following:
Error using ==> fmri_hemodyn Too many input argument.
Error in ==> flac_ev2irf at 74 xirf = fmri_hemodync(tirf, delay, tau, alpha);
Error in ==> flac_desmat at 66 [xirf tirf] = flac_ev2irf(ev, TER, flac, RefEventDur);
Error in ==> flac_customize at 356 flacnew = flac_desmat(flacnew);
Error in ==> fast_selxavg3 at 65 flac0=flac_customize(flac0);
I suspected that the errors was caused by matlab? if so, what version is required to run 5.3 version correctly?
Thanks for your help!
Xiaomin
Date: Thu, 19 Jun 2014 20:41:28 +0200 From: greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Basename error
what is your command line and terminal output
On 6/19/14 4:36 PM, Xiaomin Yue wrote:
Hi all, I am analyzing functional data using fsfast 5.3 with the error: Error using==> basename. It seems that the same problem was reported before in the mail list (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-January/021898.html), but I can't find answer in the discussion thread in the above link. Any suggestions? Thanks, Xiaomin Yue _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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