I'm using a script that calls unpacksdcmdir. Maybe there is some setting in our config file that forces the orientation? Nothing obvious though.
On Nov 13, 2012, at 12:03 PM, Douglas N Greve wrote:
I'm a little confused as to why the rows are not the phase encode direction to begin with. What did you use to convert the dicoms to nifti? doug
On 11/13/2012 11:59 AM, Clark Fisher wrote:
Thanks Doug,
Would the proper way to handle this then be to switch the rows and columns before unwarping, then switch them back before the further processing steps?
-Clark
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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