Hi Bruce,
See below. Thank you!
Anita
First I tried:
*aloenhoud@somerenserver:/data1/projects/ysbrand-vumc/pddatabase-freesurfer/0050$ *mris_anatomical_stats -mgz -f stats/lh.aparc.stats -b -a label/lh.aparc.annot -c label/aparc.annot.ctab 0050 lh pial
INFO: assuming MGZ format for volumes. computing statistics for each annotation in label/lh.aparc.annot. reading volume /data1/projects/ysbrand-vumc/pddatabase-freesurfer/0050/mri/wm.mgz... znzTAGskip: tag=1818326118, failed to calloc 541878272 bytes!
Cannot allocate memory
Then I tried the following:
*aloenhoud@somerenserver:/data1/projects/ysbrand-vumc/pddatabase-freesurfer/0050$*recon-all -autorecon3 -subjid 0050 mris_anatomical_stats -mgz -f stats/lh.aparc.stats -b -a label/lh.aparc.annot -c label/aparc.annot.ctab 0050 lh pial
ERROR: Flag mris_anatomical_stats unrecognized. -autorecon3 -subjid 0050 mris_anatomical_stats -mgz -f stats/lh.aparc.stats -b -a label/lh.aparc.annot -c label/aparc.annot.ctab 0050 lh pial Linux somerenserver.herseninstituut.knaw.nl 2.6.32-431.5.1.el6.x86_64 #1 SMP Wed Feb 12 00:41:43 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 0050 exited with ERRORS at Fri Mar 21 14:49:53 CET 2014