Chris,
This is an unusual error. I dont know why nu_correct would be found for some subjects but not others, if its being run on the same platform. I can only think this is a network issue. Is it replicable? nu_correct can be run from the command line.
The intensity normalization issues in v5.1 are related to a change in 5.1 where talairach was run before nu_correct, which doesnt seem to work as well as when run before. this is being changed for v5.2.
Nick
I believe this post slipped through the cracks. Anyone have any thoughts on this nu_correct error. Some subjects ran fine, so it seems to be an intermittent problem and not an installation problem.
Also, is this possibly related to the avi_talairach/intensity normalization issues being discussed in another post?
Chris Bell University of Minnesota
On Thu, May 31, 2012 at 12:13 PM, rega0026@umn.edu wrote:
Hello, I am trying to run recon-all using freesurfer 5.1.0. This worked on most of my subjects, but for about 10 subjects, I got an error:
nu_correct: Command not found
I can see on the archive that several others have run into this problem, but I couldn't figure out from the archives what the solution is. I do have perl installed in usr/bin.
Thanks very much, Katie
-- Kathryn R. Cullen, M.D. Assistant Professor University of Minnesota Medical School Department of Psychiatry Division of Child and Adolescent Psychiatry (612) 273-9825
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer