Dear Freesurfers,
I am now trying to do recon-all -autorecon1 and recon-all autorecon2 and then do the quality control.
When I try
" recon-all -autorecon1 -subjid ADNI_002_S_0559_MR_MPRAGE_br_raw_20080821223915203_1_S55646_I116582 -notal-check " It works. However, next when I do " recon-all -autorecon2 -subjid ADNI_002_S_0559_MR_MPRAGE_br_raw_20080821223915203_1_S55646_I116582 " or " recon-all -autorecon2 -subjid ADNI_002_S_0559_MR_MPRAGE_br_raw_20080821223915203_1_S55646_I116582 -notal-check " I always get an error. and the error message is
" recon-all -s ADNI_002_S_0559_MR_MPRAGE_br_raw_20080821223915203_1_S55646_I116582 exited with ERRORS at Thu Jul 14 18:19:02 CDT 2016 For more details, see the log file /workspace/tli3/freesurfer_try_onestep_0559_0815/ADNI_002_S_0559_MR_MPRAGE_br_raw_20080821223915203_1_S55646_I116582/scripts/recon-all.log " Could someone help me with this? Thx!
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