Dear Professor Bruce I'm just trying to convert lh.pial surface to the volume with the down below command but the output doesn't make any sense ( lh.voulme contains zero). Could you please help? Mris_volume topo_defect_after/surf/rh.pial
Thank you! On Tue, Sep 19, 2017 at 1:11 PM Fereshte fereshte.ramezani@gmail.com wrote:
On Tue, Sep 19, 2017 at 11:51 AM Fereshte fereshte.ramezani@gmail.com wrote:
I changed the FreeSurfer version to 6 and now i could find it. Thank you! Cheers
On Sat, Sep 16, 2017 at 9:21 PM Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Is it not in $FREESURFER_HOME/bin ? What version are you using?
On 9/16/17 12:05 PM, Fereshte wrote:
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte wrote:
Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i
use mri_vol2surf or something?
Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte fereshte.ramezani@gmail.com
wrote:
Hi Bruce,Thank you for your replies. Cheers
On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <
fischl@nmr.mgh.harvard.edu> wrote:
Hi Fereshte the algorithm is documented in the recon1 1999 NeuroImage and2000 PNAS
papers cheers Bruce On Mon, 4 Sep 2017, Fereshte wrote: > What's the algorithm used to expand inner cortical boundary (to achieve the
outer cortical boundary > in pial surface) in FreeSurfer? > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> it will give the interior volume of whatever surfaceyou give it as a
> command line argument. > > On Mon, 4 Sep 2017, Fereshte > wrote: > > > Using the Pial surface; Does it mean mris_volume willgive the inner
cortical boundary > of the > > surface and not the outer boundary? > > Sincerely, > > Fereshte Ramezani > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com>
wrote: > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > sure, mris_volume will give you the interiorvolume of any closed
surface > > using the divergence formula. Note that this is*not* the volume
of the > > ribbon but rather the volume of the entireinterior
> > > > cheers > > Bruce > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > Hello FreeSurfer developersIs it possible tohave the volume of
pial surface > in > > FreeSurfer? > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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