Try using mri_aparc2aseg instead of label2vol. See the --help and/or look in the recon-all.log file to get the command line used to create the aparc+aseg.mgz file doug
On 05/07/2014 11:12 AM, pfotiad@nmr.mgh.harvard.edu wrote:
Hi FS Community,
I created a lobes annotation file with the --lobesStrict flag of the mri_annotation2label and then converted it to a volume with the mri_label2vol command and the --annot flag. However, the resulting volume is just overlapping on top of the white surface, and not on the whole cortex. Is there a way to create a volume for the lobes that covers the whole cerebral cortex? That is a volume that shows you which part of the cerebral cortex belongs to each of the 6 lobes individually?
Thank you in advance, Panos _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer