Dear group, I have a T1 dicoms that looks like that:
[cid:image001.png@01D8E7D5.31FD8C20]
But the T1.mgz recon-all produces looks like that:
[cid:image002.png@01D8E7D5.31FD8C20]
How can I fix this skewness? Here is the dicoms info:
type: MGH dimensions: 640 x 640 x 243 voxel sizes: 0.390625, 0.390625, 1.000000 type: SHORT (4) fov: 250.000 dof: 1 xstart: -125.0, xend: 125.0 ystart: -125.0, yend: 125.0 zstart: -121.5, zend: 121.5 TR: 700.00 msec, TE: 15.00 msec, TI: -1.00 msec, flip angle: 120.00 degrees nframes: 1 PhEncDir: ROW FieldStrength: 3.000000 ras xform present xform info: x_r = -1.0000, y_r = -0.0000, z_r = -0.4231, c_r = -55.4712 : x_a = -0.0000, y_a = 0.0377, z_a = 0.9059, c_a = 29.9016 : x_s = 0.0000, y_s = -0.9993, z_s = 0.0165, c_s = -19.3352
talairach xfm : Orientation : LIA Primary Slice Direction: coronal
voxel to ras transform: -0.3906 -0.0000 -0.4231 120.9404 -0.0000 0.0147 0.9059 -84.8789 0.0000 -0.3903 0.0165 103.5695 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -0.138228
ras to voxel transform: -2.5600 -1.1949 -0.0451 212.8522 -0.0000 0.0467 -2.5601 269.1053 0.0000 1.1031 0.0416 89.3201 -0.0000 -0.0000 -0.0000 1.0000
Thanks! Noam
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