Hi,
The mri_surf2surf command line was
mris_surf2surf --srcsubject xxx --sval xxx/surf/lh.thickness --sfmt curv --hemi lh --trgsubject fsaverage --tfmt curv --tval fsaverage/surf/lh.xxx.thickness
mris_convert –c fsaverage/surf/lh.xxx.thickness fsaverage/surf/lh.white fsaverage/surf/lh.xxx.thickness.asc
From these two command lines, I obtained the asc file with the coordinates
of 163842 vertices and their thickness value.
Then, I did anova analysis to obtain F value and p value using MATLAB.
After I obtained the results from MATLAB, I want to map these results to inflated surface of fsaverage.
Could you tell me how to do and what command do I type? Or, you could recommend me another way to obtain the same map.
Thank you in advance!
Feng-Xian
2009/10/1 Bruce Fischl fischl@nmr.mgh.harvard.edu
what was your mri_surf2surf command line?
On Thu, 1 Oct 2009, Feng-Xian Yan wrote:
Hi,
But the number of vertex I obtain using mri_surf2surf is 65536 each hemisphere. So, how can I do to make the number is closer to 130,000?
Thank you in advance!
Feng-Xian
2009/10/1 Bruce Fischl fischl@nmr.mgh.harvard.edu
use mri_surf2surf. And you should have more than 65536
vertices/hemisphere. Usually the # is closer to 130,000
On Thu, 1 Oct 2009, Feng-Xian Yan wrote:
Hi,
I run all my subjects using recon-all ?subjid xxx ?autorecon-all. I get the cortical thickness value of each vertex (65536 each hemisphere). Then I obtain F value and p value of anova analysis using MATLAB. Now, I want to map the results of anova to fsaverage. Could these values do that? Or, you could recommend me another way to obtain the same map.
Thank you in advance!
Feng-Xian
2009/10/1 Bruce Fischl fischl@nmr.mgh.harvard.edu
Hi Feng-Xian
have you run recon-all on your anatomical data? What kind of data do you want to map? Is it a functional volume?
cheers Bruce
On Thu, 1 Oct 2009, Feng-Xian Yan wrote:
Hi,
I have a problem want to solve.
I want to map the data file (.xls or .txt) to fsaverage. What command do I type?
Thank you in advance!
Feng-Xian