Dear fs developers,
we are attempting to use the stable version of fs 5.1 for processing while also using the most current version for hippocampal segmentation on the same set of subjects (freesurfer 6.0 dev version on 28-Jan-2016). However, when the develop version of fs 6 was installed, we began having an issue with the fsaverage folder linking to the newest version, when we need it to link to version 5.1 during processing. The label files that we need for processing in version 5.1 are not accessible in the new version’s fsaverage folder. However, before we updated to fs 6.0 dev version on 28-Jan-2016, we never had this issue. So, we are wondering if the newest develop version of fs 6.0 does not allow two versions of fs to be used in the same data.
Looking forward to hearing from you and thanks in advance.
Best,
----- Fengji