How do you know it is shifted? Do you visualize it in freeview? And what are you intending to do with the CT? Maybe you are better off sampling it onto the surface than trying to map the surface onto the CT? On Mon, 3 Sep 2018, M. Jordan wrote:
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Hello,
I have a CT NIFTI coregistered to the MRI NIFTI used for reconAll. When I export the .pial files to .vtk using mris_convert, they are shifted with respect to the MRI. Is there a way to process the CT NIFTI in such a way that it will match the .vtk pial files?
Thank you!