External Email - Use Caution
One way we’ve seen recon-all eventually fail running on Linux hosted on Windows is whatever is virtualizing Linux to run on top of the Windows OS - simply runs out of memory at some point in the processing pipeline. That can result in a message in the recon-all.log like a file was not found, i.e., a computation fails and the results are not saved in a file that later on is expected to be found, opened and read. I don’t see messages like that in your log. It might be helpful to know more about how you are running Linux on windows, e.g., if you are using the built-in Windows Subsystem for Linux (WSL) or using a VM running on something like VirtualBox. You could also send along the output in the linux terminal from:$ cat /etc/os-release$ cat $FREESURFER_HOME/build-stamp.txt
- R.
On Nov 2, 2022, at 15:03, Julie Ottoy <julie.jj.ottoy@gmail.com> wrote:<recon-all.log>