Re: [Freesurfer] How means all the output file from a segmentation?

Hi Leonardo,

the outputs are listed on our wiki. If you want to extract a single structure you can use mri_binarize using the indices in the $FREESURFER_HOME/FreeSurferColorLUT.txt file.

cheers Bruce On Sat, 12 Jun 2010, Leonardo Chesi wrote:

Hi, after the segmentation process, we obtain a lots of file that I can't understand what they represent. Infact I know the mean of the file aseg.mgz (that is a mask of the segmentation) and norm.mgz but for example I can't understand the difference between brainmask.mgz and brainmask_auto.mgz. Can you help me with a list of the output? And can I obtain the volume rendering of only one part of the segmented structure? (es. Hippocampal)??

Thanks for your help

Leonardo