Re: [Freesurfer] mri_vol2vol

You shoul use mri_label2vol with ROI.nii as the --seg input. How do you know that --regheader is right?

On 8/15/19 3:13 PM, Rihana Rayan wrote:

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Dear FS users, I have performed recon-all on structural data and created ROIs (using mri_binarize), I want to mask functional data (GLM beta) with ROIs. To match the file sizes, I resampled the ROI.nii by performing the command: mri_vol2vol --mov ROI.nii --targ beta_01.nii --regheader --o ROI_in_beta.nii Multiplying ROI_in_mask.nii by GLM beta, results in NaN over some voxels. Can anyone help me solve the problem?

Best regards, Rihana

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