Hello Doug,
I am working as R&D engg in National Brain research Center,India.
here we have our own setup, Due to which i have access to DICOM images.
So Doug, what is required....apart from images.
cheers Saurabh Thakur,
On Wed, Feb 19, 2014 at 8:41 PM, Douglas Greve greve@nmr.mgh.harvard.eduwrote:
Are those dicom files ones that we distribute? If not, where do they come from? They are missing a lot of important information. Were they anonymized? doug
On 2/19/14 2:01 AM, Saurabh Thakur wrote:
command i m using is
:mri_convert -i /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/IM_0001 -o $SUBJECTS_DIR/bert/mri/orig/005.mgz
cheers Saurabh Thakur,
On Wed, Feb 19, 2014 at 12:22 PM, Saurabh Thakur srbhthkr@gmail.comwrote:
Hello Everyone,
I am facing small problem to create my own file //================================// saurabh@saurabh-Precision-WorkStation-T3500:~/Desktop/saurabh_freesurfer/bert/sam$ mri_convert -i /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/IM_0001 -o $SUBJECTS_DIR/bert/mri/orig/005.mgz mri_convert -i /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/IM_0001 -o /home/saurabh/Desktop/saurabh_freesurfer/bert/mri/orig/005.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/IM_0001... Starting DICOMRead2() dcmfile = /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/IM_0001 dcmdir = /home/saurabh/Desktop/saurabh_freesurfer/bert/sam Ref Series No = 501
*Found 156 files, checking for dicoms WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/PS_0151 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/PS_0151 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0152 WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0153 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0153 WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0154 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0154* Found 151 dicom files in series. WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/PS_0151 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/PS_0151 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0152 WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0153 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0153 WARNING: tag SeriesNumber not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0154 WARNING: tag image orientation not found in /home/saurabh/Desktop/saurabh_freesurfer/bert/sam/XX_0154 First Sorting Computing Slice Direction Vs: -121.791 -125.08 -36.7045 Vs: -0.682698 -0.701136 -0.205747 Second Sorting Counting frames nframes = 1 nslices = 151
*ndcmfiles = 151 MRIalloc(0, 0, 151): bad parm No such file or directory ERROR: mri alloc failed* //===============================================================//
Please reply asap....i m waiting for the solution.
Thanks in advanced.
cheers Saurabh Thakur,
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