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Dear Douglas,
Could you precise me: 1) Is the intensity rescaling of PET image included in the mri_gtmpvc command based on reference region in gtmseg.mgz file rather than aseg.mgz ? 2) Is this rescaling applied before PVE correction or after (i.e. based on PVE corrected reference region’s mean intensity) ?
Many thanks in advance for helping.
Best, Matthieu
Le 7 janv. 2019 à 17:26, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu a écrit :
On 1/7/19 11:18 AM, Matthieu Vanhoutte wrote:
External Email - Use CautionI used the following command to obtain only rescaled voxel-wise PET image (with no PVC): mri_gtmpvc --i PET.nii.gz --reg Pet2T1.register.dof6.lta --psf 0 --no-tfe --seg gtmseg.mgz --default-seg-merge --auto-mask PSF .01 --rbv --o nopvc
If I omitted --rbv or --mgx option I didn't get the rescaled voxel-wise PET image (without PVC). Could I obtain the rescaled voxel-wise PET image (without PVC) just by dividing each voxel of the native PET image by the mean of the reference region ?
Yes
Best, Matt
Le lun. 7 janv. 2019 à 16:01, Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> a écrit : I'm not sure what you mean. If you are turning off PVC, why are you computing RBV and MGX? What is your command line? What do you mean that these options don't seem to work?
On 12/21/18 2:22 PM, Matthieu Vanhoutte wrote:
External Email - Use CautionHi Douglas,
Thanks for helping.
To have an only rescaled voxel-wise PET image, these options seem to work only when -rbv method is used and not -mgx.
Do you know why ?
Best, Matthieu
Le mar. 18 déc. 2018 à 17:58, Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> a écrit : You will need to set --psf 0 and --no-tfe to fully turn off PVC.
On 12/18/18 4:50 AM, Matthieu Vanhoutte wrote:
External Email - Use CautionHi Douglas,
Could you help me on this point ?
Best, Matthieu
Le mer. 12 déc. 2018 à 10:50, Matthieu Vanhoutte <matthieuvanhoutte@gmail.com mailto:matthieuvanhoutte@gmail.com> a écrit : Dear Douglas,
Is it possible to use mri_gtmpvc command in order to intensity normalize PET images without applying PVE correction by setting --psf to 0 ?
Best, Matthieu
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