Hi Adam
can you check to make sure that the partition isn't full?
Bruce On Fri, 8 Nov 2013, Adam Mezher wrote:
Hi FreeSurfer experts,
I am repeatedly running into an autorecon3 error (see below). Any ideas how to fix this? It appears that the software is having an issue reading /surf/lh.sphere and immediately exits afterward.
Thank you, Adam
Adam Mezher
Staff Research Associate II
Center for Imaging of Neurodegenerative Diseases
San Francisco VA Medical Center
4150 Clement St. (114M)
San Francisco, CA 94121
Tel: 415-221-4810 Ext. 4629
Fax: 415-668-2864
using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from ../surf/lh.sphere... mris_register: could not read surface file ../surf/lh.sphere ERROR: reading ../surf/lh.sphere Read 0 bytes, expected 1 Linux aldebaran 2.6.18-194.17.4.el5 #1 SMP Mon Oct 25 15:50:53 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s PPMI_290_S_3829m12_i395612 exited with ERRORS at Wed Nov 6 15:57:07 PST 2013