Hi Shige - See $FREESURFER_HOME/FreeSurferColorLUT.txt.
a.y
On Fri, 7 Oct 2011, Shigetoshi Takaya wrote:
Dear FreeSurfers,
In aparc+aseg file, each segmented or parceled region seems to be labeled by its own intensity (e.g. the intensity is 53 in the right hippocampus, 10 in the left thalamus...) when I see it on FSL viewer.
Where can I find the table that shows the relationship between the intensity and the name of brain region? I want to extract the specific brain regions (e.g. parahippocampal gyrus, fusiform gyrus...) from the result of aparc+aseg, and use them for the seed mask or the termination mask in structural connectivity analysis (tractography).
I appreciate your help.
Thank you, Shige
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